The ATCC Genome Portal

This collection contains articles describing ATCC's approach to whole-genome sequencing, and FAQs regarding the ATCC Genome Portal

13 articles in this collection
Written by Christopher Smith, Austin Davis-Richardson, and Denise Lynch

ATCC Genome Portal Tutorial

Search for a Genome

Learn how to restrict your searches to find what you're looking for on the ATCC Genome Portal

Written by Christopher Smith
Updated this week

View Published Genomes

Understand the information in the table of published genomes on the ATCC Genome Portal

Written by Denise Lynch
Updated this week

The Genome Overview

Understand the overview tab for a genome on the ATCC Genome Portal

Written by Christopher Smith
Updated this week

View Related Genomes

Learn how to view genomes related to your genome of interest in the ATCC Genome Portal

Written by Denise Lynch
Updated this week

View Quality Control of a Genome

Understand the quality control metrics available for each microbe in the ATCC Genome Portal

Written by Austin Davis-Richardson
Updated this week

Perform a Sequence Search

How to perform a sequence search in the ATCC Genome Portal

Written by Denise Lynch
Updated this week

ATCC Genome Portal Technical Documentation

ATCC Genome Portal Technical Documentation

Learn about the ATCC Genome Portal and our approach to bacterial genome sequencing

Written by Denise Lynch
Updated this week

DNA Extraction

Learn about our approach to DNA Extraction for the ATCC Genome Portal

Written by Christopher Smith
Updated this week

Whole-Genome Sequencing

Understand ATCC's approach to whole-genome sequencing

Written by Denise Lynch
Updated this week

Genome Assembly

Understand our approach to Genome Assembly for the ATCC Genome Portal

Written by Austin Davis-Richardson
Updated this week

Estimation of Genome Relatedness

ATCC's approach to Estimation of Genome Relatedness

Written by Austin Davis-Richardson
Updated this week

ATCC Genome Portal API Guide

This provides a guide on how to view, search, and download genomes using ATCC's API

Written by Denise Lynch
Updated this week

Assembly, QC and annotation pipeline versions

View the changelogs for the pipelines used to assemble and annotation ATCC genomes

Written by Denise Lynch
Updated this week