One Codex

Christopher Smith

Denise Lynch

Austin Davis-Richardson

This collection contains articles describing ATCC's approach to whole-genome sequencing, and FAQs regarding the ATCC Genome Portal

The ATCC Genome Portal

Learn how to restrict your searches to find what you're looking for on the ATCC Genome Portal

Search for a Genome

Understand the information in the table of published genomes on the ATCC Genome Portal

View Published Genomes

Understand the overview tab for a genome on the ATCC Genome Portal

The Genome Overview

Learn how to view genomes related to your genome of interest in the ATCC Genome Portal

View Related Genomes

Understand the quality control metrics available for each microbe in the ATCC Genome Portal

View Quality Control of a Genome

How to perform a sequence search in the ATCC Genome Portal

Perform a Sequence Search

Downloading Genomes for Previously Purchased ATCC Strains

Learn what the ATCC Discrepancy Report can do for you! Available to Supporting Members.

The ATCC Discrepancy Report

Explore some ATCC genomes

ATCC Genome Portal Tutorial

Learn about the ATCC Genome Portal and our approach to bacterial genome sequencing

ATCC Genome Portal Technical Documentation

Learn about our approach to DNA Extraction for the ATCC Genome Portal

DNA Extraction

Understand ATCC's approach to whole-genome sequencing

Whole-Genome Sequencing

Understand our approach to Genome Assembly for the ATCC Genome Portal

Genome Assembly

ATCC's approach to Estimation of Genome Relatedness

Estimation of Genome Relatedness

This provides a guide on how to view, search, and download genomes using ATCC's API

ATCC Genome Portal API Guide

View the changelogs for the pipelines used to assemble and annotation ATCC genomes

Assembly, QC and annotation pipeline versions

How to Cite the ATCC Genome Portal

ATCC Genome Portal FAQ

ATCC Genome Portal

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