These articles introduce the platform and serve as a quick start guide to processing and analyzing your data!
How to upload or import your sequencing data, manage metadata and sample sheets, and share data with your collaborators
Different analyses available on One Codex and how we analyze your samples
From sample processing to sequence data and analysis with One Codex
Information on using ATCC and other kit products with One Codex
How to interact with One Codex programmatically via our API and command line interface (CLI)
These articles provide more details on the bioinformatics and databases behind One Codex
This collection will introduce you to the Jupyter Notebooks environment, coding in Python within Jupyter Notebooks, and further ways to analyze your data.
This collection contains articles describing ATCC's approach to whole-genome sequencing, and FAQs regarding the ATCC Genome Portal
Answers to Frequently Asked Questions
These articles will give you an introduction to the microbiome, including some of the common methods and metrics used to analyze microbiome data.