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These articles introduce the platform and serve as a quick start guide to processing and analyzing your data!

Sample Management

How to upload or import your sequencing data, manage metadata and sample sheets, and share data with your collaborators


Different analyses available on One Codex and how we analyze your samples

Microbiome Sequencing and Analysis

From sample processing to sequence data and analysis with One Codex

Kit Guides

Information on using ATCC and other kit products with One Codex

Developer Information

How to interact with One Codex programmatically via our API and command line interface (CLI)

Technical Appendices

These articles provide more details on the bioinformatics and databases behind One Codex

Advanced Analyses

This collection will introduce you to the Jupyter Notebooks environment, coding in Python within Jupyter Notebooks, and further ways to analyze your data.

The ATCC Genome Portal

This collection contains articles describing ATCC's approach to whole-genome sequencing, and FAQs regarding the ATCC Genome Portal


Answers to Frequently Asked Questions

Introduction to the Microbiome

These articles will give you an introduction to the microbiome, including some of the common methods and metrics used to analyze microbiome data.

Organization Features

This collection includes information on features available to One Codex organizations