Guides and documentation for using One Codex
Introduction
These articles introduce the platform and serve as a quick start guide to processing and analyzing your data!
Sample Management
How to upload or import your sequencing data, manage metadata and sample sheets, and share data with your collaborators
Analyses
Different analyses available on One Codex and how we analyze your samples
Microbiome Sequencing and Analysis
From sample processing to sequence data and analysis with One Codex
Kit Guides
Information on using ATCC and other kit products with One Codex
Developer Information
How to interact with One Codex programmatically via our API and command line interface (CLI)
Technical Appendices
These articles provide more details on the bioinformatics and databases behind One Codex
Advanced Analyses
This collection will introduce you to the Jupyter Notebooks environment, coding in Python within Jupyter Notebooks, and further ways to analyze your data.
The ATCC Genome Portal
This collection contains articles describing ATCC's approach to whole-genome sequencing, and FAQs regarding the ATCC Genome Portal
FAQ
Answers to Frequently Asked Questions
Introduction to the Microbiome
These articles will give you an introduction to the microbiome, including some of the common methods and metrics used to analyze microbiome data.
Organization Features
This collection includes information on features available to One Codex organizations