Introduction

These articles introduce the platform and serve as a quick start guide to processing and analyzing your data!

Denise Lynch avatar
1 author2 articles

Sample Management

How to upload or import your sequencing data, manage metadata and sample sheets, and share data with your collaborators

Denise Lynch avatar
1 author4 articles

Analyses

Different analyses available on One Codex and how we analyze your samples

Denise Lynch avatar
1 author10 articles

Microbiome Sequencing and Analysis

From sample processing to sequence data and analysis with One Codex

Denise Lynch avatarChristopher Smith avatar
2 authors30 articles

Kit Guides

Information on using ATCC and other kit products with One Codex

Denise Lynch avatarChristopher Smith avatar
2 authors8 articles

Developer Information

How to interact with One Codex programmatically via our API and command line interface (CLI)

Christopher Smith avatar
1 author1 article

Technical Appendices

These articles provide more details on the bioinformatics and databases behind One Codex

Christopher Smith avatarDenise Lynch avatar
2 authors3 articles

Advanced Analyses

This collection will introduce you to the Jupyter Notebooks environment, coding in Python within Jupyter Notebooks, and further ways to analyze your data.

Denise Lynch avatar
1 author4 articles

The ATCC Genome Portal

This collection contains articles describing ATCC's approach to whole-genome sequencing, and FAQs regarding the ATCC Genome Portal

Christopher Smith avatarDenise Lynch avatarAustin Davis-Richardson avatar
3 authors20 articles

FAQ

Answers to Frequently Asked Questions

Denise Lynch avatar
1 author22 articles

Introduction to the Microbiome

These articles will give you an introduction to the microbiome, including some of the common methods and metrics used to analyze microbiome data.

Denise Lynch avatar
1 author3 articles

Organization Features

This collection includes information on features available to One Codex organizations

Denise Lynch avatar
1 author8 articles