Analyses

Different analyses available on One Codex and how we analyze your samples

9 articles in this collection
Written by Denise Lynch

COVID-19 Outbreak

COVID-19 Sequencing Analysis

Test your samples for SARS-CoV-2

Written by Denise Lynch
Updated over a week ago

Analyses on One Codex

Metagenomic classification

Analyzing whole genome sequencing (WGS) and targeted sequencing (e.g., 16S) data on One Codex

Written by Denise Lynch
Updated over a week ago

Panels

Evaluating the presence of anti-microbial resistance (AMR) genes, virulence factors, and other functional markers

Written by Denise Lynch
Updated over a week ago

Alignments

Alignment of your samples against select reference genomes

Written by Denise Lynch
Updated over a week ago

Running analyses

How to manually kick off additional analyses for your samples

Written by Denise Lynch
Updated over a week ago

Comparing Samples

Compare Abundances with Quick Compare

Written by Denise Lynch
Updated over a week ago

Clustering

Reference-free comparison of your samples by whole genome clustering

Written by Denise Lynch
Updated over a week ago

Visualizing microbiome data with Custom Plots

Learn how to compare samples and make common microbiome plots on the One Codex Platform

Written by Denise Lynch
Updated over a week ago

Advanced Analyses

Custom analysis with Jupyter Notebooks

How to use the built-in Jupyter notebooks functionality for study-level analyses and statistics

Written by Denise Lynch
Updated over a week ago