Analyses

Different analyses available on One Codex and how we analyze your samples

7 articles in this collection
Written by Denise Lynch

COVID-19 Outbreak

COVID-19 Sequencing Analysis

Test your samples for SARS-CoV-2

Written by Denise Lynch
Updated over a week ago

Analyses on One Codex

Metagenomic classification

Analyzing whole genome sequencing (WGS) and targeted sequencing (e.g., 16S) data on One Codex

Written by Denise Lynch
Updated this week

Panels

Evaluating the presence of anti-microbial resistance (AMR) genes, virulence factors, and other functional markers

Written by Denise Lynch
Updated over a week ago

Alignments

Alignment of your samples against select reference genomes

Written by Denise Lynch
Updated over a week ago

Running analyses

How to manually kick off additional analyses for your samples

Written by Denise Lynch
Updated over a week ago

Comparing Samples

Clustering

Reference-free comparison of your samples by whole genome clustering

Written by Denise Lynch
Updated over a week ago

Advanced Analyses

Custom analysis with Jupyter Notebooks

How to use the built-in Jupyter notebooks functionality for study-level analyses and statistics

Written by Denise Lynch
Updated over a week ago