One Codex

Denise Lynch

Different analyses available on One Codex and how we analyze your samples

Analyses

COVID-19 Sequencing Analysis

COVID-19 Outbreak

Analyzing whole genome sequencing (WGS) and targeted sequencing (e.g., 16S) data on One Codex

Metagenomic classification

Evaluating the presence of anti-microbial resistance (AMR) genes, virulence factors, and other functional markers

Panels

Describes the Functional Analysis and how it works, giving a walkthrough of the resulting report.

Functional Analysis

An Introduction to One Codex Alignments, and How to Run Them

One Codex Alignments

Running Analyses on One Codex

Use the dropdown menu to view different analyses

Switching Between Analyses for a Sample

Analyses on One Codex

Compare Abundances with Quick Compare

Learn how to compare samples and make common microbiome plots on the One Codex Platform

Visualizing microbiome data with Custom Plots

Easily download excel tables of your classification data

Exporting Results Tables

Comparing Samples

ATCC Genome Portal

Status Page

Find answers and get help from Intercom Support and Community Experts

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