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Analyses

Analyses

Different analyses available on One Codex and how we analyze your samples

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9 articles in this collection
Written by Denise Lynch
COVID-19 Outbreak

COVID-19 Sequencing Analysis

Test your samples for SARS-CoV-2
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Written by Denise Lynch
Updated over a week ago
Analyses on One Codex

Metagenomic classification

Analyzing whole genome sequencing (WGS) and targeted sequencing (e.g., 16S) data on One Codex
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Written by Denise Lynch
Updated over a week ago

Panels

Evaluating the presence of anti-microbial resistance (AMR) genes, virulence factors, and other functional markers
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Written by Denise Lynch
Updated over a week ago

Alignments

Alignment of your samples against select reference genomes
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Written by Denise Lynch
Updated over a week ago

Running analyses

How to manually kick off additional analyses for your samples
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Written by Denise Lynch
Updated over a week ago
Comparing Samples

Compare Abundances with Quick Compare

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Written by Denise Lynch
Updated over a week ago

Clustering

Reference-free comparison of your samples by whole genome clustering
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Written by Denise Lynch
Updated over a week ago

Visualizing microbiome data with Custom Plots

Learn how to compare samples and make common microbiome plots on the One Codex Platform
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Written by Denise Lynch
Updated over a week ago
Advanced Analyses

Custom analysis with Jupyter Notebooks

How to use the built-in Jupyter notebooks functionality for study-level analyses and statistics
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Written by Denise Lynch
Updated over a week ago
One Codex Docs
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