Analyses

Different analyses available on One Codex and how we analyze your samples

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10 articles in this collection
Written by Denise Lynch, Nathaniel Bailey, and Scott Fay

COVID-19 Outbreak

COVID-19 Sequencing Analysis

Test your samples for SARS-CoV-2

Written by Denise Lynch
Updated over a week ago

Analyses on One Codex

Metagenomic classification

Analyzing whole genome sequencing (WGS) and targeted sequencing (e.g., 16S) data on One Codex

Written by Denise Lynch
Updated over a week ago

Panels

Evaluating the presence of anti-microbial resistance (AMR) genes, virulence factors, and other functional markers

Written by Denise Lynch
Updated over a week ago

Functional Analysis

Describes the Functional Analysis and how it works, giving a walkthrough of the resulting report.

Written by Scott Fay
Updated over a week ago

One Codex Alignments

An Introduction to One Codex Alignments, and How to Run Them

Written by Nathaniel Bailey
Updated over a week ago

Running analyses

How to manually kick off additional analyses for your samples

Written by Denise Lynch
Updated over a week ago

Comparing Samples

Compare Abundances with Quick Compare

Written by Denise Lynch
Updated over a week ago

Clustering

Reference-free comparison of your samples by whole genome clustering

Written by Denise Lynch
Updated over a week ago

Visualizing microbiome data with Custom Plots

Learn how to compare samples and make common microbiome plots on the One Codex Platform

Written by Denise Lynch
Updated over a week ago

Exporting Results Tables

Easily download excel tables of your classification data

Written by Denise Lynch
Updated over a week ago