https://docs.onecodex.com/en/articles/3743223-getting-started 2025-07-02T23:17:09Z https://docs.onecodex.com/en/articles/3753767-panels 2020-11-25T16:16:49Z https://docs.onecodex.com/en/articles/3753847-metagenomic-classification 2025-07-02T22:36:03Z https://docs.onecodex.com/en/articles/3754219-targeted-loci-database 2024-09-26T17:05:40Z https://docs.onecodex.com/en/articles/3754220-custom-analysis-with-jupyter-notebooks 2020-11-25T16:20:41Z https://docs.onecodex.com/en/articles/3754393-getting-started-with-atcc-microbiome-standards 2021-03-26T19:47:08Z https://docs.onecodex.com/en/articles/3754394-physical-product-details 2020-03-06T19:54:32Z https://docs.onecodex.com/en/articles/3754395-bioinformatics-details-of-atcc-microbiome-standards 2023-05-26T19:45:36Z https://docs.onecodex.com/en/articles/3754396-getting-started-with-the-ampliseq-amr-panel 2020-11-25T17:50:17Z https://docs.onecodex.com/en/articles/3761205-one-codex-database 2025-07-24T19:41:48Z https://docs.onecodex.com/en/articles/3763837-q-i-m-having-trouble-logging-in-to-one-codex-what-should-i-try 2020-11-25T21:31:17Z https://docs.onecodex.com/en/articles/3764252-core-concepts 2020-11-25T15:52:00Z https://docs.onecodex.com/en/articles/3764266-q-how-do-i-set-up-my-payment-details 2025-07-02T23:14:34Z https://docs.onecodex.com/en/articles/3764345-sharing-projects 2025-03-05T20:35:55Z https://docs.onecodex.com/en/articles/3764349-metadata 2021-01-12T19:30:12Z https://docs.onecodex.com/en/articles/3764397-importing-data 2025-05-08T19:55:30Z https://docs.onecodex.com/en/articles/3764402-api-client-library 2025-05-07T15:13:09Z https://docs.onecodex.com/en/articles/3764465-bioinformatics-details-of-the-ampliseq-report 2020-03-07T01:13:15Z https://docs.onecodex.com/en/articles/3764578-sample-management 2020-11-25T15:58:09Z https://docs.onecodex.com/en/articles/3764811-database-versions 2026-01-06T14:51:29Z https://docs.onecodex.com/en/articles/3770129-q-how-does-one-codex-work 2022-04-28T13:02:43Z https://docs.onecodex.com/en/articles/3770251-q-what-should-i-expect-after-uploading-data 2020-03-05T20:29:10Z https://docs.onecodex.com/en/articles/3770252-q-can-i-download-read-level-results 2020-03-05T20:26:48Z https://docs.onecodex.com/en/articles/3770297-q-can-i-access-my-results-or-upload-data-programatically 2020-03-05T20:26:55Z https://docs.onecodex.com/en/articles/3770300-q-what-happens-if-my-upload-includes-human-reads 2022-04-28T13:01:17Z https://docs.onecodex.com/en/articles/3770318-q-can-i-analyze-transcriptome-rna-seq-data 2020-03-06T20:08:39Z https://docs.onecodex.com/en/articles/3770343-q-can-i-analyze-16s-or-other-amplicon-re-sequencing-data 2020-03-05T20:36:38Z https://docs.onecodex.com/en/articles/3770417-q-how-do-i-start-analyzing-my-atcc-microbiome-standard-ngs-data-with-one-codex 2020-03-06T20:10:02Z https://docs.onecodex.com/en/articles/3770437-q-how-do-i-redeem-my-coupon-code-what-happens-if-i-do-not-receive-an-email-from-one-codex-with-my-code 2020-03-06T19:17:52Z https://docs.onecodex.com/en/articles/3770444-q-are-there-more-details-on-the-atcc-microbiome-standards-and-the-bioinformatics-analysis 2020-03-06T20:11:39Z https://docs.onecodex.com/en/articles/3770470-q-can-i-share-the-results-of-my-microbiome-sequencing 2020-03-05T20:44:38Z https://docs.onecodex.com/en/articles/3770495-q-how-can-i-order-atcc-microbiome-standards 2020-03-05T20:44:49Z https://docs.onecodex.com/en/articles/3770560-q-is-one-codex-secure 2020-03-05T21:26:44Z https://docs.onecodex.com/en/articles/3770597-q-can-i-run-one-codex-on-premise 2020-03-06T20:12:32Z https://docs.onecodex.com/en/articles/3770610-q-i-need-another-feature-can-i-contact-you-about-it 2020-03-06T20:04:41Z https://docs.onecodex.com/en/articles/3770727-q-my-upload-isn-t-working-what-should-i-try 2020-10-20T16:38:37Z https://docs.onecodex.com/en/articles/3770868-q-i-ve-found-a-bug-how-should-i-tell-you-about-it 2020-03-05T21:05:56Z https://docs.onecodex.com/en/articles/3793936-covid-19-sequencing-analysis 2020-11-25T16:10:41Z https://docs.onecodex.com/en/articles/3823135-coding-in-notebooks-a-python-introduction 2021-04-14T18:36:16Z https://docs.onecodex.com/en/articles/3968050-an-introduction-to-the-jupyter-notebooks-environment 2021-04-14T18:38:52Z https://docs.onecodex.com/en/articles/3996020-atcc-genome-portal-technical-documentation 2024-05-27T15:40:51Z https://docs.onecodex.com/en/articles/3996236-dna-extraction 2020-06-08T20:11:26Z https://docs.onecodex.com/en/articles/3996240-whole-genome-sequencing 2021-07-16T19:04:55Z https://docs.onecodex.com/en/articles/3996287-genome-assembly 2023-10-05T14:28:42Z https://docs.onecodex.com/en/articles/3996299-genome-annotation 2024-05-27T15:45:09Z https://docs.onecodex.com/en/articles/3996311-estimation-of-genome-relatedness 2021-04-15T22:26:34Z https://docs.onecodex.com/en/articles/3996315-interactive-genome-search 2020-06-08T19:57:54Z https://docs.onecodex.com/en/articles/3996335-getting-started-with-the-atcc-genome-portal 2025-12-02T15:39:27Z https://docs.onecodex.com/en/articles/3996697-using-the-genome-browser 2024-05-24T17:58:49Z https://docs.onecodex.com/en/articles/3996699-search-for-a-genome 2023-05-24T15:31:43Z https://docs.onecodex.com/en/articles/3996705-the-genome-overview 2021-04-15T21:20:09Z https://docs.onecodex.com/en/articles/3996707-view-published-genomes 2024-05-24T17:44:31Z https://docs.onecodex.com/en/articles/3999534-view-related-genomes 2020-11-25T21:12:42Z https://docs.onecodex.com/en/articles/3999565-view-quality-control-of-a-genome 2024-05-27T15:38:19Z https://docs.onecodex.com/en/articles/3999605-perform-a-sequence-search 2020-11-25T21:14:48Z https://docs.onecodex.com/en/articles/4033665-atcc-genome-portal-faq 2025-02-24T15:41:04Z https://docs.onecodex.com/en/articles/4136484-q-how-do-i-delete-a-sample 2020-11-25T21:30:01Z https://docs.onecodex.com/en/articles/4136547-microbiome-overview 2021-01-14T21:28:34Z https://docs.onecodex.com/en/articles/4136553-alpha-diversity 2025-07-21T15:58:22Z https://docs.onecodex.com/en/articles/4150649-beta-diversity 2021-01-14T21:23:07Z https://docs.onecodex.com/en/articles/4256891-getting-started-with-the-twist-respiratory-virus-research-panel 2025-04-29T20:12:57Z https://docs.onecodex.com/en/articles/4374804-instructions-for-ordering-sequencing-and-analysis 2024-10-10T00:26:20Z https://docs.onecodex.com/en/articles/4374845-faq-where-should-i-ship-my-samples-to 2020-10-14T20:45:44Z https://docs.onecodex.com/en/articles/4374856-faq-how-long-will-it-take-to-get-my-results 2020-10-14T20:42:19Z https://docs.onecodex.com/en/articles/4374858-faq-when-should-i-expect-my-package 2020-10-14T20:46:38Z https://docs.onecodex.com/en/articles/4374869-faq-what-kind-of-controls-are-used-during-sample-processing-and-sequencing 2020-10-14T20:43:27Z https://docs.onecodex.com/en/articles/4374878-faq-what-kind-of-samples-can-i-send 2020-10-14T21:10:52Z https://docs.onecodex.com/en/articles/4374885-faq-can-i-send-samples-that-have-already-been-extracted-genomic-dna 2024-10-16T15:28:40Z https://docs.onecodex.com/en/articles/4374901-faq-my-sequencing-is-done-how-do-i-view-my-results 2021-01-14T15:35:25Z https://docs.onecodex.com/en/articles/4378603-instructions-for-registering-samples 2025-04-15T20:43:28Z https://docs.onecodex.com/en/articles/4378685-faq-i-ve-lost-my-shipping-label-what-do-i-do 2020-10-14T20:45:17Z https://docs.onecodex.com/en/articles/4378687-faq-where-do-i-find-my-return-label-tracking-number 2020-11-25T16:52:56Z https://docs.onecodex.com/en/articles/4378690-faq-what-do-i-do-if-my-shipping-box-is-damaged 2020-10-14T20:46:20Z https://docs.onecodex.com/en/articles/4378696-faq-what-happens-to-my-remaining-sample-once-extraction-is-complete 2020-10-14T20:50:46Z https://docs.onecodex.com/en/articles/4378744-faq-what-is-the-minimum-amount-of-sample-i-need-to-send 2024-10-16T15:09:30Z https://docs.onecodex.com/en/articles/4378792-faq-i-forgot-to-register-my-samples-before-shipping-what-do-i-do 2020-10-14T20:48:34Z https://docs.onecodex.com/en/articles/4378962-faq-what-is-a-one-codex-reformat-tube 2020-10-14T21:07:10Z https://docs.onecodex.com/en/articles/4378967-faq-how-do-i-use-one-codex-reformat-tubes 2023-04-18T17:09:53Z https://docs.onecodex.com/en/articles/4378970-faq-how-long-can-i-store-my-samples-in-one-codex-reformat-tubes 2020-10-14T20:51:13Z https://docs.onecodex.com/en/articles/4378991-faq-does-one-codex-sell-or-recommend-specific-collection-devices 2020-10-14T20:55:05Z https://docs.onecodex.com/en/articles/4384927-instructions-for-packaging-and-shipping-samples 2020-11-25T16:42:46Z https://docs.onecodex.com/en/articles/4385434-faq-can-i-purchase-sequencing-and-analysis-separately 2020-10-14T20:49:08Z https://docs.onecodex.com/en/articles/4409179-faq-can-i-ship-my-samples-from-outside-the-us 2020-10-14T20:46:54Z https://docs.onecodex.com/en/articles/4409183-faq-what-instruments-do-you-use-for-sequencing 2024-08-26T14:13:14Z https://docs.onecodex.com/en/articles/4409189-faq-how-do-i-download-my-raw-sequencing-data 2024-08-09T13:49:33Z https://docs.onecodex.com/en/articles/4409199-faq-do-you-have-a-minimum-order-size 2020-10-14T20:49:51Z https://docs.onecodex.com/en/articles/4453190-faq-how-deep-will-you-sequence-my-samples 2020-10-14T20:42:47Z https://docs.onecodex.com/en/articles/4481519-faq-where-is-my-barcode-id 2020-11-25T16:50:53Z https://docs.onecodex.com/en/articles/4488002-instructions-for-reformatting-samples 2025-01-09T18:07:50Z https://docs.onecodex.com/en/articles/4499417-faq-i-can-t-find-the-instructions-from-my-one-codex-sample-kit-what-should-i-do 2020-10-14T21:13:03Z https://docs.onecodex.com/en/articles/4499901-faq-what-is-a-one-codex-sample-kit 2020-11-25T16:48:44Z https://docs.onecodex.com/en/articles/4605793-getting-started-with-the-twist-comprehensive-virus-research-panel 2025-04-29T20:01:10Z https://docs.onecodex.com/en/articles/4633959-visualizing-microbiome-data-with-custom-plots 2025-07-02T23:05:14Z https://docs.onecodex.com/en/articles/4648676-bioinformatics-details-of-the-twist-viral-panels 2026-03-19T22:45:45Z https://docs.onecodex.com/en/articles/4789397-compare-abundances-with-quick-compare 2025-07-02T23:24:48Z https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions 2023-10-05T14:09:37Z https://docs.onecodex.com/en/articles/5812163-atcc-genome-portal-api-guide 2024-12-02T15:37:51Z https://docs.onecodex.com/en/articles/5887199-q-how-do-i-get-the-reads-that-are-classified-to-a-specific-taxon 2025-12-02T22:10:50Z https://docs.onecodex.com/en/articles/5941871-exporting-results-tables 2025-09-15T22:19:48Z https://docs.onecodex.com/en/articles/5955982-q-how-do-i-cite-the-one-codex-platform 2022-02-05T02:28:01Z https://docs.onecodex.com/en/articles/5971379-q-does-one-codex-filter-or-trim-sequences 2022-03-15T20:29:22Z https://docs.onecodex.com/en/articles/6197530-importing-and-exporting-files-with-jupyter-notebooks 2022-05-10T13:50:40Z https://docs.onecodex.com/en/articles/6293070-functional-analysis 2025-12-15T17:04:34Z https://docs.onecodex.com/en/articles/6293123-q-why-are-taxonomic-results-different-in-the-one-codex-classification-and-functional-analysis-taxonomic-stratification 2024-12-05T19:30:56Z https://docs.onecodex.com/en/articles/6330105-one-codex-alignments 2022-06-30T22:21:21Z https://docs.onecodex.com/en/articles/6891181-sequencing-and-analysis-methods 2024-08-14T20:30:31Z https://docs.onecodex.com/en/articles/6891294-transnetyx-sequencing-and-analysis-methods 2025-08-11T17:43:42Z https://docs.onecodex.com/en/articles/7905448-how-to-cite-the-atcc-genome-portal 2025-06-13T13:40:25Z https://docs.onecodex.com/en/articles/7992919-one-codex-organizations 2025-12-18T09:16:25Z https://docs.onecodex.com/en/articles/8558569-github-integration 2024-06-27T13:47:45Z https://docs.onecodex.com/en/articles/8614184-genome-library 2024-02-01T05:27:54Z https://docs.onecodex.com/en/articles/8735388-launching-genome-assemblies 2024-01-31T22:39:55Z https://docs.onecodex.com/en/articles/8736152-viewing-your-genome-assembly-details 2024-01-31T22:40:12Z https://docs.onecodex.com/en/articles/8736194-search-your-genomes-for-sequences 2024-01-31T22:43:32Z https://docs.onecodex.com/en/articles/8736215-genome-assembly-workflows 2024-01-31T22:43:46Z https://docs.onecodex.com/en/articles/9217704-the-atcc-discrepancy-report 2024-05-24T17:37:46Z https://docs.onecodex.com/en/articles/9519011-launching-your-workflows 2025-02-11T16:10:54Z https://docs.onecodex.com/en/articles/9529084-creating-your-workflows 2025-02-11T13:04:03Z https://docs.onecodex.com/en/articles/9554392-setting-workflow-arguments-at-launch 2024-08-01T14:44:38Z https://docs.onecodex.com/en/articles/9554670-workflow-states-and-permissions 2024-09-27T18:27:58Z https://docs.onecodex.com/en/articles/9557729-running-analyses-on-one-codex 2024-08-01T15:59:13Z https://docs.onecodex.com/en/articles/9559059-viewing-run-details-and-results-for-workflows 2024-08-01T13:04:46Z https://docs.onecodex.com/en/articles/9573180-switching-between-analyses-for-a-sample 2024-11-27T16:10:28Z https://docs.onecodex.com/en/articles/9622857-configuring-microsoft-entra-id-for-single-sign-on 2024-07-17T20:06:42Z https://docs.onecodex.com/en/articles/9875719-q-why-is-a-species-considered-high-confidence 2024-12-05T19:31:20Z https://docs.onecodex.com/en/articles/9917786-downloading-genomes-for-previously-purchased-atcc-strains 2024-09-26T18:39:32Z https://docs.onecodex.com/en/articles/9922785-introduction-to-workflows 2024-09-27T22:48:19Z https://docs.onecodex.com/en/articles/9922948-tutorial-creating-and-running-a-nextflow-pipeline-on-one-codex-workflows 2024-09-27T20:18:18Z https://docs.onecodex.com/en/articles/10245796-q-what-is-the-difference-between-readcount-readcount-with-children-and-abundances 2024-12-09T23:41:22Z https://docs.onecodex.com/en/articles/10258650-dependencies-between-workflows 2025-02-07T19:49:00Z https://docs.onecodex.com/en/articles/10531998-accessing-the-one-codex-api-within-workflows 2025-02-11T14:27:04Z https://docs.onecodex.com/en/articles/10723075-explore-some-atcc-genomes 2025-07-28T16:08:01Z https://docs.onecodex.com/en/articles/11322940-faq-how-do-i-see-the-status-of-my-sequencing-samples 2025-05-07T22:43:32Z https://docs.onecodex.com/en/articles/13185192-multi-locus-sequence-typing-mlst-on-one-codex 2025-12-19T14:16:36Z https://docs.onecodex.com/en/articles/13194381-q-there-are-some-tags-on-my-sample-what-are-they 2026-02-18T22:05:47Z https://docs.onecodex.com/en/collections/2173834-introduction 2024-06-24T20:54:13Z https://docs.onecodex.com/en/collections/2191457-sample-management 2024-06-24T20:55:17Z https://docs.onecodex.com/en/collections/2191461-analyses 2024-06-24T20:54:30Z https://docs.onecodex.com/en/collections/2519996-microbiome-sequencing-and-analysis 2024-06-24T20:56:58Z https://docs.onecodex.com/en/collections/9673389-your-authored-workflows-on-one-codex 2024-08-01T14:11:22Z https://docs.onecodex.com/en/collections/2190024-kit-guides 2024-06-24T20:56:53Z https://docs.onecodex.com/en/collections/2186168-developer-information 2024-06-24T20:53:53Z https://docs.onecodex.com/en/collections/2186080-technical-appendices 2024-06-24T20:53:43Z https://docs.onecodex.com/en/collections/2316230-advanced-analyses 2024-06-24T20:53:22Z https://docs.onecodex.com/en/collections/2314023-the-atcc-genome-portal 2024-06-24T20:52:56Z https://docs.onecodex.com/en/collections/57779-faq 2024-06-24T20:49:06Z https://docs.onecodex.com/en/collections/2395689-introduction-to-the-microbiome 2024-06-24T20:53:03Z https://docs.onecodex.com/en/collections/6973367-organization-features 2024-06-24T20:49:07Z https://docs.onecodex.com/en/collections/2585084-one-codex-internal-collection 2024-06-24T20:49:07Z